The Filmfare Best Film Award is given by the Filmfare magazine as part of its annual Filmfare Awards South for Malayalam films.
| Year | Film | Producer | Ref |
|---|---|---|---|
| 2010 | Pranchiyettan and the Saint | Renjith | [1] |
| 2009 | Pazhassi Raja | Gokulam Gopalan | [2] |
| 2008 | Thirakkatha | Ranjith, Maha Subair | [3] |
| 2007 | Kadha Parayumbol | Sreenivasan, Mukesh | [4] |
| 2006 | Notebook | P. V. Gangadharan | [5] |
| 2005 | Achuvinte Amma | P. V. Gangadharan | [6] |
| 2004 | Kaazhcha | Noushad Xavy and Manoj Mathew | [7] |
| 2003 | Manassinakkare | Maha Subair | [8] |
| 2002 | Nandanam | Sideeq | [9] |
| 2001 | Meghamalhar | M. V. Shreyams Kumar | [10] |
| 2000 | Karunam | Jayaraj, Antony Irinjalakkut | [11] |
| 1999 | Veendum Chila Veettukaryangal | P. V. Gangadharan | [12] |
| 1998 | Chinthavishtayaya Shyamala | C. Karunakaran | [13] |
| 1993 | Vatsalyam | H.M.Basheer | [14] |
| 1992 | Sargam | Bhavani Hariharan | [15] |
| 1974 | Chattakari | M. O. Joseph | |
| 1973 | |||
| 1972 | |||
| 1971 | |||
| 1970 | |||
| 1969 | Adimakal | M. O. Joseph | |
| 1968 | |||
| 1967 | |||
| 1966 |
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